6E59

Crystal structure of the human NK1 tachykinin receptor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIPIDIC CUBIC PHASE293100 mM sodium citrate, pH 5.4, 30% PEG300, 200 mM potassium nitrate, 2% 2,5-hexanediol
Crystal Properties
Matthews coefficientSolvent content
4.3771.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.789α = 90
b = 61.975β = 100.18
c = 142.942γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2016-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.033APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.434.4494.10.1686.97411937
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.43.460.5770.41

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 4ZJ83.434.441131058679.340.25110.24830.3048RANDOM65.516
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.950.06-0.4-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.667
r_dihedral_angle_3_deg14.734
r_dihedral_angle_4_deg13.023
r_dihedral_angle_1_deg5.788
r_angle_other_deg1.534
r_angle_refined_deg1.515
r_chiral_restr0.104
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.667
r_dihedral_angle_3_deg14.734
r_dihedral_angle_4_deg13.023
r_dihedral_angle_1_deg5.788
r_angle_other_deg1.534
r_angle_refined_deg1.515
r_chiral_restr0.104
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.007
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3844
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms1572

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing