Experiment: 6E57

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	JCSG Plus screen in C5 (0.8 M NaH2PO4, 0.8 M KH2PO4, 0.1M sodium HEPES pH 7.5)

Crystal Properties
Matthews coefficient	Solvent content
3.97	68.99

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 156.438	α = 90
b = 243.652	β = 90
c = 76.059	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 300 mm CCD		2016-12-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 21-ID-G	0.9786	APS	21-ID-G

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.71	78.34	97.74	0.1238	10.44	5.7		78048

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.71	2.807	98.32		0.8111	0.7	2.42

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.71	78.34	74118	3927	97.73	0.1965	0.1943	0.2382	RANDOM	56.498

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.41			0.3		0.12

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	44.286
r_dihedral_angle_2_deg	37.002
r_sphericity_bonded	24.727
r_dihedral_angle_4_deg	15.004
r_dihedral_angle_3_deg	13.351
r_dihedral_angle_1_deg	6.83
r_angle_refined_deg	0.861
r_angle_other_deg	0.698
r_rigid_bond_restr	0.576
r_chiral_restr	0.039

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	44.286
r_dihedral_angle_2_deg	37.002
r_sphericity_bonded	24.727
r_dihedral_angle_4_deg	15.004
r_dihedral_angle_3_deg	13.351
r_dihedral_angle_1_deg	6.83
r_angle_refined_deg	0.861
r_angle_other_deg	0.698
r_rigid_bond_restr	0.576
r_chiral_restr	0.039
r_bond_refined_d	0.004
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11933
Nucleic Acid Atoms
Solvent Atoms	140
Heterogen Atoms	260

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
AutoSol	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.