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Crystal structure of human BRD4(1) in complex with CN750
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 297 100 mM TrisHCl pH 8.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.93 36.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.477 α = 90 b = 51.468 β = 90.22 c = 55.297 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 55.3 97.6 0.041 0.048 0.025 21.7 3.5 61603
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.31 94.9 0.21 0.248 0.132 0.944 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.26 55.3 58739 2857 97.52 0.1631 0.1618 0.1713 0.1886 0.1973 RANDOM 12.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.01 0.56 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.416 r_dihedral_angle_3_deg 13.521 r_dihedral_angle_4_deg 12.003 r_dihedral_angle_1_deg 6.023 r_angle_refined_deg 2.297 r_angle_other_deg 1.189 r_chiral_restr 0.141 r_bond_refined_d 0.021 r_gen_planes_refined 0.015 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.416 r_dihedral_angle_3_deg 13.521 r_dihedral_angle_4_deg 12.003 r_dihedral_angle_1_deg 6.023 r_angle_refined_deg 2.297 r_angle_other_deg 1.189 r_chiral_restr 0.141 r_bond_refined_d 0.021 r_gen_planes_refined 0.015 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2095 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 94
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing