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Crystal structure of G6PD in complex with structural NADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 293 20% w/v PEG 3350, 0.2 M potassium formate
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.58 α = 90 b = 173.41 β = 90 c = 215.909 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.0 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 95.3 0.79 1 11 5.7 40413
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 91.3 0.12 0.82 3 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BHL 1.9 18.28 40413 2171 94.69 0.17402 0.17182 0.1804 0.21258 0.2158 RANDOM 24.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.04 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.712 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_3_deg 14.464 r_dihedral_angle_1_deg 6.852 r_long_range_B_refined 5.464 r_long_range_B_other 5.382 r_scangle_other 3.906 r_scbond_it 2.453 r_scbond_other 2.453 r_mcangle_it 2.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.712 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_3_deg 14.464 r_dihedral_angle_1_deg 6.852 r_long_range_B_refined 5.464 r_long_range_B_other 5.382 r_scangle_other 3.906 r_scbond_it 2.453 r_scbond_other 2.453 r_mcangle_it 2.147 r_mcangle_other 2.146 r_angle_refined_deg 1.786 r_mcbond_it 1.427 r_mcbond_other 1.426 r_angle_other_deg 1.07 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3946 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing