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SAMHD1 without Catalytic Nucleotides
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 100 MM BIS-TRIS PH 6.7 AND 25% (W/V) PEG1500
Crystal Properties Matthews coefficient Solvent content 2.21 44.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.546 α = 90 b = 146.372 β = 113.67 c = 98.929 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2017-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.97912 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 97.5 0.126 0.985 6.3 2.9 76374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 98.7 0.427 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 50 72364 4009 94.67 0.21427 0.21232 0.2163 0.25044 0.2542 RANDOM 67.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.26 -2.99 0.73 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.244 r_dihedral_angle_3_deg 17.422 r_dihedral_angle_4_deg 16.076 r_long_range_B_refined 14.203 r_mcangle_it 7.774 r_scbond_it 5.838 r_dihedral_angle_1_deg 5.154 r_mcbond_it 4.982 r_angle_refined_deg 1.681 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.244 r_dihedral_angle_3_deg 17.422 r_dihedral_angle_4_deg 16.076 r_long_range_B_refined 14.203 r_mcangle_it 7.774 r_scbond_it 5.838 r_dihedral_angle_1_deg 5.154 r_mcbond_it 4.982 r_angle_refined_deg 1.681 r_chiral_restr 0.111 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15723 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 270
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing