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SAMHD1 Bound to Gemcitabine-TP in the Catalytic Pocket
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 100 MM BIS-TRIS PH 6.7 AND 25% (W/V) PEG1500
Crystal Properties Matthews coefficient Solvent content 2.05 40.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.686 α = 90 b = 142.901 β = 113.92 c = 98.907 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97910 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 97 0.093 0.998 13.2 3.5 148608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.96 96.4 0.775 0.521 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.93 90.41 141136 7434 96.99 0.17487 0.17328 0.1813 0.20536 0.2099 RANDOM 36.856
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.1 0.08 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.019 r_dihedral_angle_3_deg 16.965 r_dihedral_angle_4_deg 16.325 r_long_range_B_refined 7.047 r_long_range_B_other 7.04 r_dihedral_angle_1_deg 5.715 r_scangle_other 3.943 r_mcangle_it 2.732 r_mcangle_other 2.732 r_scbond_other 2.492
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.019 r_dihedral_angle_3_deg 16.965 r_dihedral_angle_4_deg 16.325 r_long_range_B_refined 7.047 r_long_range_B_other 7.04 r_dihedral_angle_1_deg 5.715 r_scangle_other 3.943 r_mcangle_it 2.732 r_mcangle_other 2.732 r_scbond_other 2.492 r_scbond_it 2.491 r_angle_refined_deg 2.254 r_mcbond_it 1.709 r_mcbond_other 1.709 r_angle_other_deg 1.15 r_chiral_restr 0.14 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15616 Nucleic Acid Atoms Solvent Atoms 597 Heterogen Atoms 383
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing