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Crystal structure of plant UVB photoreceptor UVR8 from in situ serial Laue diffraction
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 9.2 294 3.5 mg/mL protein, 7-10% PEG 8000, 50 mM MgCl2, and 50 mM tris buffer at pH 9.2
Crystal Properties Matthews coefficient Solvent content 2.59 52.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.2 α = 90 b = 80.3 β = 94.8 c = 190 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 294 CCD RAYONIX MX340-HS KB mirrors 2015-08-24 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 1-1.25 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 85.9 10.3 7.6 99141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 4naa 2 47.333 97644 4938 86.63 0.2574 0.2535 0.2538 0.3281 0.3289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.245 f_angle_d 1.054 f_chiral_restr 0.059 f_bond_d 0.009 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11172 Nucleic Acid Atoms Solvent Atoms 988 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement Precognition data reduction Epinorm data reduction