Experiment: 6D6S

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
2	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
3	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	283	Varian UNITY 800
4	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	308	Varian UNITY 800
5	3D-SOFAST-(1H)-13C HMQC-NOESY-1H-13C HMQC	0.6 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3] Trigger Factor, 0.6 mM [Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	100% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
6	13C-edited SOFAST-NOESY-HMQC	0.6 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3] Trigger Factor, 0.6 mM [Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	100% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
7	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] RBD, 0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3] PPD-SBD	100% D2O	100 mM	7.0	1 atm	295	Varian UNITY 600
8	3D-SOFAST-(1H)-13C HMQC-NOESY-1H-13C HMQC	0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] RBD, 0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3] PPD-SBD	100% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
9	13C-edited SOFAST-NOESY-HMQC	0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] RBD, 0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3] PPD-SBD	100% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
10	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	0.5 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] SBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 700
11	3D (1H)-15N HMQC-NOESY-1H-13C HMQC	0.5 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] SBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 700
12	3D (1H)-13C HMQC-NOESY-1H-15N HMQC	0.5 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] SBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 700
13	13C-edited NOESY-HMQC	0.5 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] SBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
14	15N-edited NOESY-HSQC	0.5 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] SBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
15	13C-edited NOESY-HSQC	0.8 mM [U-99% 13C; U-99% 15N] PPD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
16	15N-edited NOESY-HSQC	0.8 mM [U-99% 13C; U-99% 15N] PPD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
17	3D (1H)-13C HMQC-NOESY-1H-13C HMQC	0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] RBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800
18	13C-edited NOESY-HSQC	0.3 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] RBD	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 600
19	2D 1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
22	2D 1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	283	Varian UNITY 800
23	2D 1H-13C HMQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	308	Varian UNITY 800
24	2D 1H-13C HSQC aromatic	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Varian UNITY 800
20	2D 1H-15N HSQC	2.2 mM [U-2H; Ala-13CH3; Met-13CH3; Ile-d1-13CH3; Leu/Val-13CH3/13CH3; Phe-13C15N; Tyr-13C15N] TF	93% H2O/7% D2O	100 mM	7.0	1 atm	295	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	800
2	Bruker	AVANCE III	700
3	Bruker	AVANCE III	600
4	Varian	UNITY	800
5	Varian	UNITY	600

NMR Refinement
Method	Details	Software
molecular dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	800
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	Olivia		Masashi Yokochi
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6D6S | pdb_00006d6s

Solution structure of Trigger Factor dimer

Prepare Data

Validate Data

Deposit Data

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 6D6S | pdb_00006d6s

Solution structure of Trigger Factor dimer

6D6S | pdb_00006d6s