X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP282.180 mM calcium acetate, 40 mM HEPES (pH 7.3), 3 mM dithiothreitol, and 16% polyethylene glycol 4000
Crystal Properties
Matthews coefficientSolvent content
2.3647.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.409α = 90
b = 85.341β = 96.57
c = 232.465γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80CCDRAYONIX MX-3002015-03-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.885095.921.53.9156789
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.881.93

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.88230.94143436740187.550.187470.18520.23151RANDOM22.755
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.180.120.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.872
r_dihedral_angle_4_deg17.091
r_dihedral_angle_3_deg16.121
r_dihedral_angle_1_deg6.085
r_long_range_B_refined5.942
r_long_range_B_other5.831
r_scangle_other4.349
r_mcangle_it2.955
r_mcangle_other2.955
r_scbond_it2.842
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.872
r_dihedral_angle_4_deg17.091
r_dihedral_angle_3_deg16.121
r_dihedral_angle_1_deg6.085
r_long_range_B_refined5.942
r_long_range_B_other5.831
r_scangle_other4.349
r_mcangle_it2.955
r_mcangle_other2.955
r_scbond_it2.842
r_scbond_other2.842
r_mcbond_it2.022
r_mcbond_other2.022
r_angle_refined_deg1.862
r_angle_other_deg1.082
r_chiral_restr0.113
r_bond_refined_d0.018
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15501
Nucleic Acid Atoms
Solvent Atoms1065
Heterogen Atoms394

Software

Software
Software NamePurpose
REFMACrefinement
UCSD-systemdata processing
XDSdata scaling
PHASERphasing