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The Crystal Structure of XOAT1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M MES pH 6.0 to 7.0, 15% to 22% w/v PEG 3350, 0.02 M Calcium chloride dihydrate, 0.02 M Cadmium chloride hydrate and 0.02 M Cobalt(II) chloride hexahydrate
Crystal Properties Matthews coefficient Solvent content 1.75 29.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.431 α = 90 b = 58.169 β = 90 c = 138.528 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 HELIOS MIRRORS 2016-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54188
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.9 0.1198 9 6.6 34979
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 7.85 100 0.5017 2 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 69.26 33131 1722 99.67 0.16365 0.16077 0.1727 0.21863 0.2256 RANDOM 21.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 -1.15 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.508 r_dihedral_angle_4_deg 16.479 r_dihedral_angle_3_deg 13.936 r_dihedral_angle_1_deg 6.294 r_long_range_B_refined 6.282 r_long_range_B_other 6.281 r_scangle_other 4.321 r_scbond_it 2.792 r_scbond_other 2.791 r_mcangle_it 2.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.508 r_dihedral_angle_4_deg 16.479 r_dihedral_angle_3_deg 13.936 r_dihedral_angle_1_deg 6.294 r_long_range_B_refined 6.282 r_long_range_B_other 6.281 r_scangle_other 4.321 r_scbond_it 2.792 r_scbond_other 2.791 r_mcangle_it 2.576 r_mcangle_other 2.575 r_angle_refined_deg 1.913 r_mcbond_it 1.858 r_mcbond_other 1.844 r_angle_other_deg 1.091 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2925 Nucleic Acid Atoms Solvent Atoms 552 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection SAINT data reduction CRANK2 phasing