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Structure of Fungal GH62 from Thielavia terretris
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4O8N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 0.1 M sodium acetate, 2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 1.89 31.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.267 α = 90 b = 79.747 β = 90 c = 82.922 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.45863 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 57.48 99.8 0.071 0.086 0.045 0.998 11.9 5.5 20946 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.91 97.4 0.386 0.522 0.349 0.838 2.2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4o8n 1.87 57.48 19767 1178 99.65 0.15019 0.14736 0.158 0.19533 0.2034 RANDOM 23.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.93 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.458 r_dihedral_angle_4_deg 24.43 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 7.744 r_long_range_B_refined 4.688 r_long_range_B_other 4.509 r_mcangle_other 1.838 r_mcangle_it 1.836 r_scangle_other 1.768 r_angle_refined_deg 1.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.458 r_dihedral_angle_4_deg 24.43 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 7.744 r_long_range_B_refined 4.688 r_long_range_B_other 4.509 r_mcangle_other 1.838 r_mcangle_it 1.836 r_scangle_other 1.768 r_angle_refined_deg 1.628 r_scbond_it 1.152 r_scbond_other 1.152 r_mcbond_it 1.123 r_mcbond_other 1.113 r_angle_other_deg 0.981 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2306 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction PHASER phasing