6CC7

Structure of Fungal GH62 from Thielavia terretris


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.62910.1 M sodium acetate, 2 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
1.8931.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.267α = 90
b = 79.747β = 90
c = 82.922γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2016-10-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE W01B-MX21.45863LNLSW01B-MX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8757.4899.80.0710.0860.0450.99811.95.5209462
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.871.9197.40.3860.5220.3490.8382.22.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4o8n1.8757.4819767117899.650.150190.147360.19533RANDOM23.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.860.93-1.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.458
r_dihedral_angle_4_deg24.43
r_dihedral_angle_3_deg10.705
r_dihedral_angle_1_deg7.744
r_long_range_B_refined4.688
r_long_range_B_other4.509
r_mcangle_other1.838
r_mcangle_it1.836
r_scangle_other1.768
r_angle_refined_deg1.628
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.458
r_dihedral_angle_4_deg24.43
r_dihedral_angle_3_deg10.705
r_dihedral_angle_1_deg7.744
r_long_range_B_refined4.688
r_long_range_B_other4.509
r_mcangle_other1.838
r_mcangle_it1.836
r_scangle_other1.768
r_angle_refined_deg1.628
r_scbond_it1.152
r_scbond_other1.152
r_mcbond_it1.123
r_mcbond_other1.113
r_angle_other_deg0.981
r_chiral_restr0.095
r_bond_refined_d0.014
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2306
Nucleic Acid Atoms
Solvent Atoms298
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
xia2data reduction
PHASERphasing