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Macrophage Migration Inhibitory Factor in Complex with a Pyrazole Inhibitor (8m)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.4M ammonium sulfate, 3% isopropanol, 0.1M Tris pH 7
Crystal Properties Matthews coefficient Solvent content 2.79 55.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.149 α = 90 b = 68.46 β = 90 c = 88.699 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 54.2 98.3 39.8 5.8 28209
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 54.2 25311 2830 98.15 0.17683 0.17265 0.1815 0.21367 0.2206 RANDOM 24.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.779 r_dihedral_angle_4_deg 16.229 r_dihedral_angle_3_deg 9.929 r_dihedral_angle_1_deg 5.449 r_long_range_B_refined 5.083 r_long_range_B_other 5.083 r_scangle_other 2.297 r_mcangle_it 1.701 r_mcangle_other 1.7 r_scbond_it 1.437
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.779 r_dihedral_angle_4_deg 16.229 r_dihedral_angle_3_deg 9.929 r_dihedral_angle_1_deg 5.449 r_long_range_B_refined 5.083 r_long_range_B_other 5.083 r_scangle_other 2.297 r_mcangle_it 1.701 r_mcangle_other 1.7 r_scbond_it 1.437 r_scbond_other 1.436 r_angle_refined_deg 1.326 r_mcbond_it 1.058 r_mcbond_other 1.058 r_angle_other_deg 0.887 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2567 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing