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Macrophage Migration Inhibitory Factor in Complex with a Pyrazole Inhibitor (6a)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2.4M ammonium sulfate, 3% isopropanol, 0.1M Tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.62 53.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.305 α = 90 b = 68.31 β = 90 c = 83.309 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 52.82 97 16.23 6.4 17430
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 52.82 14279 1608 88.6 0.23737 0.23229 0.2363 0.28192 0.284 RANDOM 33.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.98 1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.391 r_dihedral_angle_4_deg 14.812 r_dihedral_angle_3_deg 13.766 r_dihedral_angle_1_deg 5.733 r_long_range_B_refined 4.695 r_long_range_B_other 4.694 r_mcangle_other 2.482 r_mcangle_it 2.48 r_scangle_other 2.371 r_mcbond_it 1.455
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.391 r_dihedral_angle_4_deg 14.812 r_dihedral_angle_3_deg 13.766 r_dihedral_angle_1_deg 5.733 r_long_range_B_refined 4.695 r_long_range_B_other 4.694 r_mcangle_other 2.482 r_mcangle_it 2.48 r_scangle_other 2.371 r_mcbond_it 1.455 r_mcbond_other 1.45 r_scbond_it 1.399 r_scbond_other 1.377 r_angle_refined_deg 1.344 r_angle_other_deg 0.929 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2597 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing