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Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.252 r_long_range_B_refined 15.311 r_long_range_B_other 15.311 r_dihedral_angle_3_deg 11.91 r_mcangle_it 9.561 r_mcangle_other 9.561 r_scangle_other 9.538 r_dihedral_angle_4_deg 8.579 r_mcbond_it 5.781 r_mcbond_other 5.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.252 r_long_range_B_refined 15.311 r_long_range_B_other 15.311 r_dihedral_angle_3_deg 11.91 r_mcangle_it 9.561 r_mcangle_other 9.561 r_scangle_other 9.538 r_dihedral_angle_4_deg 8.579 r_mcbond_it 5.781 r_mcbond_other 5.78 r_scbond_it 5.391 r_scbond_other 5.39 r_dihedral_angle_1_deg 4.498 r_angle_other_deg 3.757 r_angle_refined_deg 0.962 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human P-glycoprotein E556Q, E1201Q
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 143451 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 80
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING Coot 0.8.7 MODEL REFINEMENT REFMAC CCP4 7.0 MODEL REFINEMENT PHENIX 1.11 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT FREALIGN RECONSTRUCTION FREALIGN
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 143451