6BYV | pdb_00006byv

Solution NMR structure of cysteine-rich calcium bound domains of very low density lipoprotein receptor

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	350 uM [U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
2	3D HNCACB	250 uM [U-99% 13C; U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
3	3D CBCA(CO)NH	250 uM [U-99% 13C; U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
4	3D HNCA	250 uM [U-99% 13C; U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
5	3D HNCO	250 uM [U-99% 13C; U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
6	3D 1H-15N NOESY	350 uM [U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
7	3D 1H-13C NOESY	250 uM [U-99% 13C; U-99% 15N] VLDLR	100% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 600
8	2D 1H-15N HSQC	350 uM [U-99% 15N] VLDLR	93% H2O/7% D2O	100 mM	6.2	760 mmHg	306.5	Bruker AVANCE 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	500
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	Analysis		CCPN
4	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	geometry optimization	TALOS		Cornilescu, Delaglio and Bax