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Solution NMR structure of cysteine-rich calcium bound domains of very low density lipoprotein receptor
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 350 uM [U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 2 3D HNCACB 250 uM [U-99% 13C; U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 3 3D CBCA(CO)NH 250 uM [U-99% 13C; U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 4 3D HNCA 250 uM [U-99% 13C; U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 5 3D HNCO 250 uM [U-99% 13C; U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 6 3D 1H-15N NOESY 350 uM [U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 7 3D 1H-13C NOESY 250 uM [U-99% 13C; U-99% 15N] VLDLR 100% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 600 8 2D 1H-15N HSQC 350 uM [U-99% 15N] VLDLR 93% H2O/7% D2O 100 mM 6.2 760 mmHg 306.5 Bruker AVANCE 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Analysis CCPN 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 geometry optimization TALOS Cornilescu, Delaglio and Bax