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Structure of the major pilin protein (T3.2) from Streptococcus pyogenes serotype GAS13637
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BBT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 0.2 M NH4H2PO4, 20% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.18 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.05 α = 90.77 b = 60.57 β = 91.77 c = 72.79 γ = 104.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210r 2014-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 72.74 96.4 0.039 0.999 19.7 3.9 47406
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 95.4 0.296 0.937 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6BBT 1.8 72.74 45137 2262 96.38 0.20022 0.1978 0.2072 0.24873 0.2573 RANDOM 24.855
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 0.68 -1.96 -0.18 -1.11 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.334 r_dihedral_angle_3_deg 12.832 r_dihedral_angle_4_deg 7.6 r_dihedral_angle_1_deg 6.368 r_long_range_B_refined 5.307 r_long_range_B_other 4.87 r_scangle_other 2.634 r_mcangle_it 2.094 r_mcangle_other 2.094 r_scbond_it 1.632
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.334 r_dihedral_angle_3_deg 12.832 r_dihedral_angle_4_deg 7.6 r_dihedral_angle_1_deg 6.368 r_long_range_B_refined 5.307 r_long_range_B_other 4.87 r_scangle_other 2.634 r_mcangle_it 2.094 r_mcangle_other 2.094 r_scbond_it 1.632 r_scbond_other 1.632 r_angle_refined_deg 1.376 r_mcbond_it 1.32 r_mcbond_other 1.319 r_angle_other_deg 0.85 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4312 Nucleic Acid Atoms Solvent Atoms 586 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling BUSTER phasing