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Lactate Dehydrogenase in complex with inhibitor (R)-3-((2-chlorophenyl)thio)-6-(3-((4-fluorophenyl)amino)phenyl)-4-hydroxy-6-(thiophen-3-yl)-5,6-dihydro-2H-pyran-2-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 PEG3350, sodium malonate
Crystal Properties Matthews coefficient Solvent content 2.21 44.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.125 α = 90 b = 80.968 β = 98.33 c = 103.214 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M 2012-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9795 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 39 97.8 0.046 16.6 3.4 91115 -3 31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 95.9 0.491 2.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 38.65 89141 1830 97.9 0.16753 0.16648 0.1738 0.21507 0.2134 RANDOM 37.916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 -1.47 2.2 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.653 r_dihedral_angle_4_deg 21.211 r_scangle_other 14.209 r_long_range_B_other 13.945 r_long_range_B_refined 13.924 r_scbond_other 12.833 r_scbond_it 12.811 r_dihedral_angle_3_deg 12.758 r_mcangle_other 9.331 r_mcangle_it 9.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.653 r_dihedral_angle_4_deg 21.211 r_scangle_other 14.209 r_long_range_B_other 13.945 r_long_range_B_refined 13.924 r_scbond_other 12.833 r_scbond_it 12.811 r_dihedral_angle_3_deg 12.758 r_mcangle_other 9.331 r_mcangle_it 9.325 r_mcbond_it 8.645 r_mcbond_other 8.598 r_dihedral_angle_1_deg 5.713 r_angle_refined_deg 1.509 r_angle_other_deg 0.976 r_chiral_restr 0.172 r_gen_planes_refined 0.021 r_gen_planes_other 0.017 r_bond_refined_d 0.01 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10065 Nucleic Acid Atoms Solvent Atoms 721 Heterogen Atoms 334
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing