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Crystal structure of Xanthomonas campestris OleA H285N
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ROW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 292 18% PEG 8000, 100 mM potassium phosphate dibasic, 100 mM sodium citrate pH 4.2
Crystal Properties Matthews coefficient Solvent content 2.39 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.517 α = 90 b = 85.077 β = 90 c = 103.28 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03322 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.72 98.9 0.068 0.077 0.036 0.998 16 4.3 48443 29.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.06 92.6 0.506 0.581 0.28 0.813 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3ROW 2 29.72 45967 2420 98.76 0.1668 0.1641 0.1751 0.2182 0.2255 RANDOM 34.409
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 0.07 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.309 r_dihedral_angle_4_deg 21.71 r_dihedral_angle_3_deg 15.504 r_dihedral_angle_1_deg 6.852 r_angle_refined_deg 2.258 r_angle_other_deg 1.152 r_chiral_restr 0.143 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.309 r_dihedral_angle_4_deg 21.71 r_dihedral_angle_3_deg 15.504 r_dihedral_angle_1_deg 6.852 r_angle_refined_deg 2.258 r_angle_other_deg 1.152 r_chiral_restr 0.143 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5197 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 50
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing XDS data reduction