☰ Navigation Tabs
Asparaginyl endopeptidase 1 bound to AAN peptide, a tetrahedral intermediate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289.15 0.1 M HEPES (pH 7.5), 1.4 M sodium citrate tribasic dihydrate
Crystal Properties Matthews coefficient Solvent content 1.7 27.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.03 α = 90 b = 77.03 β = 90 c = 108.171 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2016-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 66.71 93.8 14.7 4.1 31205
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 66.71 31205 1654 93.8 0.154 0.152 0.152 0.189 0.1892 RANDOM 23.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 0.29 0.58 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.323 r_dihedral_angle_4_deg 14.428 r_dihedral_angle_3_deg 12.211 r_long_range_B_refined 6.026 r_dihedral_angle_1_deg 5.78 r_scbond_it 3.072 r_mcangle_it 2.602 r_mcbond_it 1.85 r_angle_refined_deg 1.837 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.323 r_dihedral_angle_4_deg 14.428 r_dihedral_angle_3_deg 12.211 r_long_range_B_refined 6.026 r_dihedral_angle_1_deg 5.78 r_scbond_it 3.072 r_mcangle_it 2.602 r_mcbond_it 1.85 r_angle_refined_deg 1.837 r_chiral_restr 0.132 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2128 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing