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Naegleria fowleri CYP51-ketoconazole complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TL8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 293 33% PEG MME 550, 0.03 CaCl2, 4% Jeffamine M-600, 0.1 M bis-Tris propane, pH 6.9
Crystal Properties Matthews coefficient Solvent content 2.17 43.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.21 α = 90 b = 55.25 β = 100.13 c = 71.62 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M MIRRORS 2016-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 70.5 95.1 0.203 0.223 0.988 3.79 6.07 36286 -3 42.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.92 68.4 1.887 2.118 0.358 0.53 4.702
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5TL8 1.87 70.5 34450 1836 95.09 0.2452 0.2431 0.2445 0.2839 0.2835 RANDOM 46.123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 -1.22 0.89 -1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.731 r_dihedral_angle_3_deg 16.909 r_dihedral_angle_4_deg 16.286 r_dihedral_angle_1_deg 7.197 r_angle_refined_deg 1.26 r_angle_other_deg 0.657 r_chiral_restr 0.087 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.731 r_dihedral_angle_3_deg 16.909 r_dihedral_angle_4_deg 16.286 r_dihedral_angle_1_deg 7.197 r_angle_refined_deg 1.26 r_angle_other_deg 0.657 r_chiral_restr 0.087 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3527 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction XDS data reduction Coot model building