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Naegleria fowleri CYP51-fluconazole complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 33% PEG MME 550, 0.03 M CaCl2, 4% Jeffamine, 0.1 M bis-Tris propane, pH 7.1
Crystal Properties Matthews coefficient Solvent content 2.27 45.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.11 α = 90 b = 55.31 β = 101.52 c = 73.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M MIRRORS 2017-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 72.01 97.7 0.07 0.087 0.998 7.94 2.584 13108 -3 85.618
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 99.8 1.604 1.991 0.427 0.57 2.608
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 72.01 12443 665 97.63 0.2598 0.2569 0.2421 0.3132 0.2939 RANDOM 97.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 -7.49 -4.24 4.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.634 r_dihedral_angle_3_deg 18.177 r_dihedral_angle_4_deg 16.485 r_dihedral_angle_1_deg 7.77 r_angle_refined_deg 1.506 r_angle_other_deg 0.641 r_chiral_restr 0.06 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.634 r_dihedral_angle_3_deg 18.177 r_dihedral_angle_4_deg 16.485 r_dihedral_angle_1_deg 7.77 r_angle_refined_deg 1.506 r_angle_other_deg 0.641 r_chiral_restr 0.06 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_gen_planes_other 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3584 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 81
Software Software Software Name Purpose XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Coot model building