X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52981.0M Ammonium Sulphate, 1% PEG 3350, 0.1M Bis Tris pH 5.5
Crystal Properties
Matthews coefficientSolvent content
3.5665.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 94.433α = 90
b = 94.433β = 90
c = 153.707γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MFlat Si Rh coated M02015-01-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.979500SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.180.4698.90.0570.04116.7520361
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1699.31.0220.7481.85.11645

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2QSQ2.180.4619328102098.390.206220.205290.22302RANDOM54.236
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.261.26-2.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.181
r_dihedral_angle_3_deg15.339
r_dihedral_angle_4_deg11.58
r_dihedral_angle_1_deg6.629
r_long_range_B_refined4.953
r_long_range_B_other4.952
r_angle_refined_deg1.521
r_mcangle_it1.163
r_mcangle_other1.162
r_scangle_other1.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.181
r_dihedral_angle_3_deg15.339
r_dihedral_angle_4_deg11.58
r_dihedral_angle_1_deg6.629
r_long_range_B_refined4.953
r_long_range_B_other4.952
r_angle_refined_deg1.521
r_mcangle_it1.163
r_mcangle_other1.162
r_scangle_other1.114
r_angle_other_deg0.916
r_mcbond_it0.687
r_mcbond_other0.687
r_scbond_it0.681
r_scbond_other0.681
r_chiral_restr0.084
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1684
Nucleic Acid Atoms
Solvent Atoms66
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing