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Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 298 0.1 M Phosphate-citrate pH 4.2, 40% Ethanol, 5% PEG 000
Crystal Properties Matthews coefficient Solvent content 1.89 34.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.775 α = 90 b = 39.775 β = 90 c = 68.563 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 90 105.8 16.9 10167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 27.6 0.103 0.67 0.983 11.6 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 34.45 2905 140 91.97 0.16899 0.16614 0.1743 0.22294 0.2192 RANDOM 18.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.79 r_dihedral_angle_3_deg 10.875 r_dihedral_angle_1_deg 7.734 r_long_range_B_other 6.094 r_long_range_B_refined 6.093 r_dihedral_angle_4_deg 4.469 r_scangle_other 3.548 r_mcangle_it 2.569 r_mcangle_other 2.562 r_scbond_it 2.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.79 r_dihedral_angle_3_deg 10.875 r_dihedral_angle_1_deg 7.734 r_long_range_B_other 6.094 r_long_range_B_refined 6.093 r_dihedral_angle_4_deg 4.469 r_scangle_other 3.548 r_mcangle_it 2.569 r_mcangle_other 2.562 r_scbond_it 2.244 r_scbond_other 2.201 r_angle_refined_deg 1.713 r_mcbond_it 1.601 r_mcbond_other 1.572 r_angle_other_deg 0.932 r_chiral_restr 0.126 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 280 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing