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Acetyl xylan esterase from Paenibacillus sp. R4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 1.8 M sodium phosphate monobasic monohydrate, potassium phosphate dibasic pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.6 52.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.797 α = 90 b = 141.659 β = 104.49 c = 105.369 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315r 2017-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 96.8 27.2 3.7 121844
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 49.39 115533 6247 96.11 0.20116 0.19824 0.2057 0.25438 0.2575 RANDOM 35.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.505 r_dihedral_angle_4_deg 15.962 r_dihedral_angle_3_deg 15.252 r_long_range_B_refined 7.128 r_long_range_B_other 7.094 r_dihedral_angle_1_deg 7.058 r_scangle_other 5.587 r_mcangle_it 3.969 r_mcangle_other 3.969 r_scbond_it 3.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.505 r_dihedral_angle_4_deg 15.962 r_dihedral_angle_3_deg 15.252 r_long_range_B_refined 7.128 r_long_range_B_other 7.094 r_dihedral_angle_1_deg 7.058 r_scangle_other 5.587 r_mcangle_it 3.969 r_mcangle_other 3.969 r_scbond_it 3.673 r_scbond_other 3.673 r_mcbond_it 2.897 r_mcbond_other 2.896 r_angle_refined_deg 1.806 r_angle_other_deg 1.09 r_chiral_restr 0.117 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15060 Nucleic Acid Atoms Solvent Atoms 767 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MxDC data collection HKL-2000 data scaling Coot model building