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E269A mutant of highly active EfBSH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 0.14 M CaCl2, 0.07M CH3COONa pH-4.6, 14% v/v isopropanol.
Crystal Properties Matthews coefficient Solvent content 2.3 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.84 α = 90 b = 156.32 β = 98.88 c = 73.15 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2017-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON RRCAT INDUS-2 BEAMLINE PX-BL21 0.9795 RRCAT INDUS-2 PX-BL21
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 41.14 100 0.219 0.255 0.131 0.978 3.8 12 77248
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.1 0.984
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WL3 2.1 41.18 73391 3706 99.83 0.20559 0.20343 0.2147 0.24787 0.2557 RANDOM 15.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 -2.19 -0.74 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.661 r_dihedral_angle_4_deg 20.997 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_1_deg 7.488 r_angle_other_deg 3.639 r_long_range_B_refined 3.02 r_long_range_B_other 3.006 r_scangle_other 2.101 r_mcangle_it 1.725 r_mcangle_other 1.725
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.661 r_dihedral_angle_4_deg 20.997 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_1_deg 7.488 r_angle_other_deg 3.639 r_long_range_B_refined 3.02 r_long_range_B_other 3.006 r_scangle_other 2.101 r_mcangle_it 1.725 r_mcangle_other 1.725 r_angle_refined_deg 1.403 r_scbond_it 1.271 r_scbond_other 1.271 r_mcbond_it 1.018 r_mcbond_other 1.018 r_chiral_restr 0.067 r_bond_refined_d 0.009 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10372 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing