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R207A mutant of highly active EfBSH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.1 M Sodium Citrate Tribasic Dihydrate,
22 % PEG 1000
Crystal Properties Matthews coefficient Solvent content 2.21 44.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.33 α = 90 b = 156.45 β = 98.62 c = 72.91 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2017-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON RRCAT INDUS-2 BEAMLINE PX-BL21 0.97949 RRCAT INDUS-2 PX-BL21
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 39.11 98.7 0.196 0.225 0.11 0.978 5 4 83294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2 0.992 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WL3 2 39.01 79140 4095 94.12 0.20288 0.20138 0.2137 0.23215 0.2425 RANDOM 15.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 -2.24 -1.1 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.125 r_dihedral_angle_4_deg 19.672 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 7.248 r_long_range_B_refined 4.517 r_long_range_B_other 4.514 r_angle_other_deg 3.622 r_scangle_other 3.362 r_mcangle_it 2.275 r_mcangle_other 2.275
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.125 r_dihedral_angle_4_deg 19.672 r_dihedral_angle_3_deg 13.831 r_dihedral_angle_1_deg 7.248 r_long_range_B_refined 4.517 r_long_range_B_other 4.514 r_angle_other_deg 3.622 r_scangle_other 3.362 r_mcangle_it 2.275 r_mcangle_other 2.275 r_scbond_it 2.131 r_scbond_other 2.131 r_angle_refined_deg 1.475 r_mcbond_it 1.415 r_mcbond_other 1.415 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10364 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing