☰ Navigation Tabs
Crystal Structure of Delta 5-3-Ketosteroid Isomerase from Mycobacterium sp.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A15 2A15, 1OH0 experimental model PDB 1OH0 2A15, 1OH0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.1M Tri-Sodium acetate pH 4.5, 0.1M Bis-Tris pH 5.5, 21%-29% Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 3.09 60.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.63 α = 90 b = 107.84 β = 90 c = 301.66 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 47.815 100 0.102 0.029 0.999 1.9 14 59832
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.49 1.698 0.408 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2A15, 1OH0 2.42 47.81 56965 2867 99.94 0.2227 0.2203 0.2703 0.2538 RANDOM 61.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.18 3.63 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.577 r_dihedral_angle_4_deg 19.335 r_dihedral_angle_3_deg 15.787 r_dihedral_angle_1_deg 7.155 r_mcangle_it 6.855 r_mcbond_it 4.923 r_mcbond_other 4.919 r_angle_other_deg 3.934 r_angle_refined_deg 1.788 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.577 r_dihedral_angle_4_deg 19.335 r_dihedral_angle_3_deg 15.787 r_dihedral_angle_1_deg 7.155 r_mcangle_it 6.855 r_mcbond_it 4.923 r_mcbond_other 4.919 r_angle_other_deg 3.934 r_angle_refined_deg 1.788 r_chiral_restr 0.095 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.008 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7955 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection xia2 data reduction Aimless data scaling BUCCANEER model building REFMAC refinement PDB_EXTRACT data extraction