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Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1M citric acid, pH 6.5, 35%(w/v) PEG600
Crystal Properties Matthews coefficient Solvent content 2.57 52.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.72 α = 90 b = 79.016 β = 90 c = 101.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315r 2013-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 42.7 98.3 26.7 7 35221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 42.7 33408 1758 98.33 0.17323 0.17087 0.1851 0.21711 0.2296 RANDOM 40.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.456 r_dihedral_angle_4_deg 23.789 r_dihedral_angle_3_deg 15.768 r_long_range_B_other 11.695 r_long_range_B_refined 11.662 r_scangle_other 10.293 r_scbond_it 7.103 r_scbond_other 7.101 r_dihedral_angle_1_deg 6.926 r_mcangle_other 5.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.456 r_dihedral_angle_4_deg 23.789 r_dihedral_angle_3_deg 15.768 r_long_range_B_other 11.695 r_long_range_B_refined 11.662 r_scangle_other 10.293 r_scbond_it 7.103 r_scbond_other 7.101 r_dihedral_angle_1_deg 6.926 r_mcangle_other 5.1 r_mcangle_it 5.091 r_mcbond_it 4.383 r_mcbond_other 4.364 r_angle_refined_deg 2.61 r_angle_other_deg 1.276 r_chiral_restr 0.186 r_bond_refined_d 0.03 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2660 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing