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Structure of house dust mite allergen Der F 21 in PEG2KMME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1M Tris (pH 8.0) and 30% PEG MME 2000
Crystal Properties Matthews coefficient Solvent content 2.01 32.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.237 α = 90 b = 50.934 β = 97.33 c = 69.642 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28.74 97.8 0.039 0.046 0.023 0.999 16.2 3.7 19287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.1 0.407 0.476 0.244 0.903 3.3 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 28.74 18302 973 97.31 0.2232 0.2207 0.2232 0.2726 0.2758 RANDOM 68.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.9 -0.07 4.01 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_dihedral_angle_3_deg 20.985 r_dihedral_angle_4_deg 20.144 r_dihedral_angle_1_deg 4.635 r_angle_refined_deg 1.591 r_angle_other_deg 1.485 r_chiral_restr 0.087 r_bond_refined_d 0.014 r_bond_other_d 0.008 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_dihedral_angle_3_deg 20.985 r_dihedral_angle_4_deg 20.144 r_dihedral_angle_1_deg 4.635 r_angle_refined_deg 1.591 r_angle_other_deg 1.485 r_chiral_restr 0.087 r_bond_refined_d 0.014 r_bond_other_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3544 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing Coot model building