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Crystal structure of GH10 xylanase from Bispora. sp MEY-1 with xylobiose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298.15 19% PEG 3350, 0.4 M magnesium chloride, 0.1 M BIS-TRIS HYDROCHLORIDE pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.45 49.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.274 α = 90 b = 83.136 β = 94.25 c = 65.387 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.00919 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 25 99.9 5.96 4.2 79182
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 25 75179 4011 99.71 0.12691 0.12376 0.1277 0.18323 0.1885 RANDOM 33.035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 2.2 -0.72 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.681 r_sphericity_free 23.55 r_dihedral_angle_3_deg 14.827 r_sphericity_bonded 14.046 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 7.787 r_scangle_other 6.773 r_rigid_bond_restr 6.349 r_scbond_it 6.33 r_scbond_other 6.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.681 r_sphericity_free 23.55 r_dihedral_angle_3_deg 14.827 r_sphericity_bonded 14.046 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 7.787 r_scangle_other 6.773 r_rigid_bond_restr 6.349 r_scbond_it 6.33 r_scbond_other 6.33 r_long_range_B_refined 5.715 r_long_range_B_other 5.653 r_mcangle_it 4.488 r_mcangle_other 4.488 r_mcbond_it 4.126 r_mcbond_other 4.123 r_angle_refined_deg 1.489 r_angle_other_deg 0.811 r_chiral_restr 0.113 r_gen_planes_refined 0.015 r_bond_refined_d 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5286 Nucleic Acid Atoms Solvent Atoms 608 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing