5W1L

Echinococcus granulosus thioredoxin glutathione reductas (egTGR) with Gold


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529818% (w/v) polyethylene glycol 3350, 0.1 M lithium sulfate, 0.1 M Tris-HCl, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
358.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.346α = 90
b = 109.346β = 90
c = 258.713γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.98APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.871009916.813.236052

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.88100.7234270180498.970.187860.184650.24898RANDOM75.281
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.55-0.551.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.476
r_dihedral_angle_4_deg21.056
r_dihedral_angle_3_deg20.161
r_dihedral_angle_1_deg8.747
r_long_range_B_refined5.576
r_long_range_B_other5.575
r_scangle_other3.616
r_mcangle_it3.405
r_mcangle_other3.405
r_scbond_it2.231
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.476
r_dihedral_angle_4_deg21.056
r_dihedral_angle_3_deg20.161
r_dihedral_angle_1_deg8.747
r_long_range_B_refined5.576
r_long_range_B_other5.575
r_scangle_other3.616
r_mcangle_it3.405
r_mcangle_other3.405
r_scbond_it2.231
r_scbond_other2.231
r_angle_refined_deg2.145
r_mcbond_it2.072
r_mcbond_other2.072
r_angle_other_deg1.2
r_chiral_restr0.123
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9006
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing