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Crystal structure of BpGH50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 17-25% PEG 3350, 0.04-0.1M Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.2 44.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.1 α = 90 b = 87.37 β = 105.5 c = 74.67 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.92017 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 71.95 99.3 0.067 0.998 15.9 6.1 176279
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 95.6 0.451 0.844 3.9 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 71.95 167367 8912 99.3 0.1076 0.1056 0.1055 0.1454 0.1455 RANDOM 16.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.01 0.05 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.447 r_sphericity_free 23.865 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 11.762 r_sphericity_bonded 9.022 r_dihedral_angle_1_deg 6.176 r_rigid_bond_restr 3.102 r_mcangle_it 2.103 r_angle_refined_deg 1.802 r_mcbond_it 1.704
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.447 r_sphericity_free 23.865 r_dihedral_angle_4_deg 18.996 r_dihedral_angle_3_deg 11.762 r_sphericity_bonded 9.022 r_dihedral_angle_1_deg 6.176 r_rigid_bond_restr 3.102 r_mcangle_it 2.103 r_angle_refined_deg 1.802 r_mcbond_it 1.704 r_mcbond_other 1.699 r_angle_other_deg 1.066 r_chiral_restr 0.127 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7354 Nucleic Acid Atoms Solvent Atoms 960 Heterogen Atoms 72
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction