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Crystal structure of the putative periplasmic solute-binding protein from Campylobacter jejuni
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 25% P3350, 0.1M B-Tris pH 6.5, MgSulphate 1mM
Crystal Properties Matthews coefficient Solvent content 2.1 41.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.19 α = 68.88 b = 89.276 β = 82.52 c = 100.394 γ = 70.66
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD beryllium lenses 2016-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.1 0.11 0.9 21.8 11.8 167225
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 97 0.69 3.7 11.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 30 155567 8289 95.81 0.17815 0.17571 0.1843 0.22393 0.2284 RANDOM 30.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.2 -0.19 0.36 -0.13 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.267 r_dihedral_angle_4_deg 15.183 r_dihedral_angle_3_deg 10.553 r_long_range_B_refined 5.07 r_long_range_B_other 5.07 r_dihedral_angle_1_deg 2.933 r_angle_refined_deg 1.73 r_scangle_other 1.646 r_mcangle_it 1.405 r_mcangle_other 1.405
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.267 r_dihedral_angle_4_deg 15.183 r_dihedral_angle_3_deg 10.553 r_long_range_B_refined 5.07 r_long_range_B_other 5.07 r_dihedral_angle_1_deg 2.933 r_angle_refined_deg 1.73 r_scangle_other 1.646 r_mcangle_it 1.405 r_mcangle_other 1.405 r_scbond_it 1.01 r_scbond_other 1.008 r_angle_other_deg 0.924 r_mcbond_it 0.845 r_mcbond_other 0.844 r_chiral_restr 0.115 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20409 Nucleic Acid Atoms Solvent Atoms 1619 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHENIX phasing PHENIX model building