X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82930.1M HEPES/NaOHpH=8, 2.9M NaCl
Crystal Properties
Matthews coefficientSolvent content
4.5272.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.38α = 90
b = 99.38β = 90
c = 106.733γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-07-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97625DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3172.841000.15813.213.124134

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.3172.8422829118899.980.215070.213420.24631RANDOM58.304
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.07-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.05
r_dihedral_angle_3_deg15.421
r_dihedral_angle_4_deg11.402
r_long_range_B_refined7.826
r_long_range_B_other7.791
r_dihedral_angle_1_deg6.445
r_scbond_it2.973
r_scbond_other2.972
r_mcbond_it2.51
r_mcbond_other2.492
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.05
r_dihedral_angle_3_deg15.421
r_dihedral_angle_4_deg11.402
r_long_range_B_refined7.826
r_long_range_B_other7.791
r_dihedral_angle_1_deg6.445
r_scbond_it2.973
r_scbond_other2.972
r_mcbond_it2.51
r_mcbond_other2.492
r_angle_refined_deg1.325
r_angle_other_deg0.969
r_chiral_restr0.083
r_bond_refined_d0.01
r_bond_other_d0.002
r_gen_planes_refined0.001
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_it
r_mcangle_other
r_scangle_it
r_scangle_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1740
Nucleic Acid Atoms
Solvent Atoms224
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
REFMACphasing