5ODM

NtiPr polyamide in complex with 5'CGATGTACTACG3

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	90% H2O/10% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
2	2D 1H-1H NOESY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	100% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
3	2D DQF-COSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	100% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
4	2D 1H-1H TOCSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	100% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
5	2D 1H-13C HSQC	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	100% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600
6	1H-31PCOSY	1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA7	100% D2O	100 phosphate mM	7.4	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
molecular dynamics		Amber
matrix relaxation		MARDIGRAS

NMR Ensemble Information
Conformer Selection Criteria	clustering
Conformers Calculated Total Number	2000
Conformers Submitted Total Number	10

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	chemical shift assignment	Sparky		Goddard
4	processing	TopSpin		Bruker Biospin
5	structure calculation	MARDIGRAS		N. Ulyanov