5O9R

Crystal structure of ScGas2 in complex with compound 9


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP291PEG 3500, ammonium sulfate, BIS-Tris pH 6
Crystal Properties
Matthews coefficientSolvent content
2.1542.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.2α = 90
b = 71.2β = 90
c = 150.44γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2015-05-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.979DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7150.4499.60.07514.78.960003
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7997.70.51437.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2W621.7150.4458100183199.490.195920.195390.21193RANDOM25.376
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.811.54-0.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.681
r_dihedral_angle_4_deg14.203
r_dihedral_angle_3_deg12.195
r_dihedral_angle_1_deg5.782
r_long_range_B_refined3.456
r_long_range_B_other3.456
r_angle_refined_deg1.244
r_mcangle_it0.977
r_mcangle_other0.977
r_angle_other_deg0.933
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.681
r_dihedral_angle_4_deg14.203
r_dihedral_angle_3_deg12.195
r_dihedral_angle_1_deg5.782
r_long_range_B_refined3.456
r_long_range_B_other3.456
r_angle_refined_deg1.244
r_mcangle_it0.977
r_mcangle_other0.977
r_angle_other_deg0.933
r_scangle_other0.783
r_mcbond_it0.525
r_mcbond_other0.525
r_scbond_it0.443
r_scbond_other0.442
r_chiral_restr0.075
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3418
Nucleic Acid Atoms
Solvent Atoms328
Heterogen Atoms126

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing