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Crystal structure of ScGas2 in complex with compound 9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PEG 3500, ammonium sulfate, BIS-Tris pH 6
Crystal Properties Matthews coefficient Solvent content 2.15 42.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.2 α = 90 b = 71.2 β = 90 c = 150.44 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 150.44 99.6 0.075 14.7 8.9 60003
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 97.7 0.514 3 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2W62 1.7 150.44 58100 1831 99.49 0.19592 0.19539 0.2043 0.21193 0.2202 RANDOM 25.376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 1.54 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.681 r_dihedral_angle_4_deg 14.203 r_dihedral_angle_3_deg 12.195 r_dihedral_angle_1_deg 5.782 r_long_range_B_refined 3.456 r_long_range_B_other 3.456 r_angle_refined_deg 1.244 r_mcangle_it 0.977 r_mcangle_other 0.977 r_angle_other_deg 0.933
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.681 r_dihedral_angle_4_deg 14.203 r_dihedral_angle_3_deg 12.195 r_dihedral_angle_1_deg 5.782 r_long_range_B_refined 3.456 r_long_range_B_other 3.456 r_angle_refined_deg 1.244 r_mcangle_it 0.977 r_mcangle_other 0.977 r_angle_other_deg 0.933 r_scangle_other 0.783 r_mcbond_it 0.525 r_mcbond_other 0.525 r_scbond_it 0.443 r_scbond_other 0.442 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3418 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing