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Structure of a fHbp(V1.1):PorA(P1.16) chimera. Fusion at fHbp position 309.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AYD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 294 0.01M zinc chloride, 0.1M sodium acetate, 20%(w/v) PEG6000
Crystal Properties Matthews coefficient Solvent content 2.49 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.37 α = 90 b = 76.27 β = 91.26 c = 83.9 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92818 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 58.55 98.6 0.062 0.041 12.7 3 70772
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.67 93.9 0.615 0.534 1.5 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ayd 1.63 58.55 67325 3445 98.54 0.16353 0.16199 0.1739 0.1944 0.2037 RANDOM 26.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 0.01 -0.72 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.567 r_dihedral_angle_4_deg 14.048 r_dihedral_angle_3_deg 13.592 r_long_range_B_refined 10.23 r_long_range_B_other 10.23 r_dihedral_angle_1_deg 6.939 r_scangle_other 6.753 r_scbond_it 4.312 r_scbond_other 4.312 r_mcangle_other 3.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.567 r_dihedral_angle_4_deg 14.048 r_dihedral_angle_3_deg 13.592 r_long_range_B_refined 10.23 r_long_range_B_other 10.23 r_dihedral_angle_1_deg 6.939 r_scangle_other 6.753 r_scbond_it 4.312 r_scbond_other 4.312 r_mcangle_other 3.907 r_mcangle_it 3.899 r_mcbond_it 2.782 r_mcbond_other 2.637 r_angle_refined_deg 1.975 r_angle_other_deg 1.446 r_chiral_restr 0.168 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.008 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4046 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing