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Crystal structure of HiLPMO9B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EIS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 polyacrylic acid, MgCl2, HEPES
Crystal Properties Matthews coefficient Solvent content 2.2 44.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.695 α = 90 b = 46.375 β = 103.23 c = 86.492 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.38 99.8 0.147 7.2 3.7 24456
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 99.5 0.599 1.4 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4EIS 2.1 46.38 23131 1314 99.77 0.203 0.20027 0.2071 0.25143 0.2532 RANDOM 17.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.47 -1.69 0.86 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.643 r_dihedral_angle_3_deg 10.751 r_dihedral_angle_1_deg 6.485 r_dihedral_angle_4_deg 5.248 r_long_range_B_refined 3.125 r_long_range_B_other 3.122 r_angle_refined_deg 1.225 r_angle_other_deg 0.864 r_mcangle_it 0.826 r_mcangle_other 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.643 r_dihedral_angle_3_deg 10.751 r_dihedral_angle_1_deg 6.485 r_dihedral_angle_4_deg 5.248 r_long_range_B_refined 3.125 r_long_range_B_other 3.122 r_angle_refined_deg 1.225 r_angle_other_deg 0.864 r_mcangle_it 0.826 r_mcangle_other 0.822 r_scangle_other 0.724 r_mcbond_it 0.472 r_mcbond_other 0.464 r_scbond_it 0.423 r_scbond_other 0.423 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3360 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 186
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing