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GFP nuclear transport receptor mimic 3B8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EMA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.1 293 5-9% PEG8000, 28% glycerol, 100?mM Imidazole (pH 7.1)
Crystal Properties Matthews coefficient Solvent content 2.29 46.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.401 α = 90 b = 73.398 β = 93.73 c = 93.927 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 50 x 50?M 2016-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.664 46.28 98.38 0.1287 0.998 12.47 6.8 114871 23.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.664 1.723 96.49 1.91 0.468 1.18 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1EMA 1.66 46.86 109127 5744 98.39 0.17532 0.17375 0.1858 0.20573 0.2164 RANDOM 26.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.67 -0.54 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.424 r_dihedral_angle_4_deg 18.186 r_dihedral_angle_3_deg 13.425 r_long_range_B_other 8.499 r_long_range_B_refined 8.498 r_dihedral_angle_1_deg 7.264 r_scangle_other 5.725 r_scbond_it 3.646 r_scbond_other 3.646 r_mcangle_it 2.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.424 r_dihedral_angle_4_deg 18.186 r_dihedral_angle_3_deg 13.425 r_long_range_B_other 8.499 r_long_range_B_refined 8.498 r_dihedral_angle_1_deg 7.264 r_scangle_other 5.725 r_scbond_it 3.646 r_scbond_other 3.646 r_mcangle_it 2.631 r_mcangle_other 2.631 r_angle_refined_deg 2.318 r_mcbond_it 1.824 r_mcbond_other 1.821 r_angle_other_deg 1.192 r_chiral_restr 0.163 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7327 Nucleic Acid Atoms Solvent Atoms 788 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing