☰ Navigation Tabs
Crystal structure of Pseudomonas stutzeri flavinyl transferase ApbE, apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 281 0.1 M Bis-Tris pH 6.5
28% polyethylene glycol 2000 monomethyl ether
Crystal Properties Matthews coefficient Solvent content 2.99 58.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.656 α = 90 b = 91.983 β = 90.41 c = 138.061 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2015-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 138.06 100 2.7 6.9 104767
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 138.06 99638 5134 99.95 0.23392 0.23187 0.2327 0.27394 0.2706 RANDOM 60.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 0.75 -1.24 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.159 r_dihedral_angle_4_deg 18.353 r_dihedral_angle_3_deg 16.932 r_long_range_B_refined 12.314 r_long_range_B_other 12.314 r_dihedral_angle_1_deg 6.624 r_scangle_other 6.451 r_mcangle_it 6.406 r_mcangle_other 6.406 r_mcbond_it 3.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.159 r_dihedral_angle_4_deg 18.353 r_dihedral_angle_3_deg 16.932 r_long_range_B_refined 12.314 r_long_range_B_other 12.314 r_dihedral_angle_1_deg 6.624 r_scangle_other 6.451 r_mcangle_it 6.406 r_mcangle_other 6.406 r_mcbond_it 3.937 r_mcbond_other 3.937 r_scbond_it 3.883 r_scbond_other 3.883 r_angle_refined_deg 2.004 r_angle_other_deg 1.12 r_chiral_restr 0.1 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18672 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement