5MGY | pdb_00005mgy

Crystal structure of Pseudomonas stutzeri flavinyl transferase ApbE, apo form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth H]	SCOP2 Family	ApbE-like	8096671	4003899	SCOP2 (2022-06-29)
A [auth H]	SCOP2 Superfamily	ApbE-like	8096672	3001754	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth H]	ApbE_C	e5mgyH2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
A [auth H]	ApbE_N	e5mgyH1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
B	ApbE_C	e5mgyB2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
B	ApbE_N	e5mgyB1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
C [auth G]	ApbE_C	e5mgyG2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
C [auth G]	ApbE_N	e5mgyG1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
D [auth A]	ApbE_C	e5mgyA1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
D [auth A]	ApbE_N	e5mgyA2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
E [auth C]	ApbE_C	e5mgyC2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
E [auth C]	ApbE_N	e5mgyC1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
F [auth D]	ApbE_C	e5mgyD1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
F [auth D]	ApbE_N	e5mgyD2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
G [auth E]	ApbE_C	e5mgyE1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
G [auth E]	ApbE_N	e5mgyE2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
H [auth F]	ApbE_C	e5mgyF2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
H [auth F]	ApbE_N	e5mgyF1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth H]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
B	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
C [auth G]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
D [auth A]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
E [auth C]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
F [auth D]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
G [auth E]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
H [auth F]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	PF02424	ApbE family (ApbE)	ApbE family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	FAD:protein FMN transferase	cation binding ion binding binding metal ion binding small molecule binding transferase activity catalytic activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	IPR003374	ApbE-like superfamily	Homologous Superfamily
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	IPR024932	Flavin transferase ApbE	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.