5MGY | pdb_00005mgy

Crystal structure of Pseudomonas stutzeri flavinyl transferase ApbE, apo form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth F]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
D [auth A]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ApbE-like	8096672	3001754	SCOP2B (2022-06-29)
A [auth H]	SCOP2 Family	ApbE-like	8096671	4003899	SCOP2 (2022-06-29)
A [auth H]	SCOP2 Superfamily	ApbE-like	8096672	3001754	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth F]	ApbE_C	e5mgyF2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
H [auth F]	ApbE_N	e5mgyF1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
G [auth E]	ApbE_C	e5mgyE1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
G [auth E]	ApbE_N	e5mgyE2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
F [auth D]	ApbE_C	e5mgyD1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
F [auth D]	ApbE_N	e5mgyD2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
E [auth C]	ApbE_C	e5mgyC2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
E [auth C]	ApbE_N	e5mgyC1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
D [auth A]	ApbE_C	e5mgyA1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
D [auth A]	ApbE_N	e5mgyA2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
C [auth G]	ApbE_C	e5mgyG2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
C [auth G]	ApbE_N	e5mgyG1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
B	ApbE_C	e5mgyB2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
B	ApbE_N	e5mgyB1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)
A [auth H]	ApbE_C	e5mgyH2	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_C	ECOD (1.6)
A [auth H]	ApbE_N	e5mgyH1	A: a+b two layers	X: T-fold	H: ApbE-like (From Topology)	T: ApbE-like	F: ApbE_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth F]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
G [auth E]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
F [auth D]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
E [auth C]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
D [auth A]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
C [auth G]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
B	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)
A [auth H]	3.10.520.10	Alpha Beta	Roll	T-fold	ApbE-like domains	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	FAD:protein FMN transferase	cation binding ion binding binding metal ion binding small molecule binding transferase activity catalytic activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	IPR003374	ApbE-like superfamily	Homologous Superfamily
A [auth H], B, C [auth G], D [auth A], E [auth C], A [auth H], B, C [auth G], D [auth A], E [auth C], F [auth D], G [auth E], H [auth F]	IPR024932	Flavin transferase ApbE	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.