5KOM

The crystal structure of fluoride channel Fluc Ec2 F83I Mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.529536% PEG 600, 100 mM ADA, 10 mM HEPES, 100 mM NaF, 50 mM LiNO3
Crystal Properties
Matthews coefficientSolvent content
5.2876.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.5α = 90
b = 87.5β = 90
c = 144.54γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-08-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9999ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6938.0199.90.0830.99915.97.430195
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.692.821001.0377.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5A432.6938.0128695145599.880.21770.2170.2296RANDOM75.044
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.49-2.494.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.126
r_dihedral_angle_3_deg13.658
r_dihedral_angle_4_deg7.694
r_dihedral_angle_1_deg6.109
r_mcangle_it2.373
r_mcbond_it1.402
r_mcbond_other1.401
r_angle_refined_deg1.285
r_angle_other_deg0.932
r_chiral_restr0.072
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.126
r_dihedral_angle_3_deg13.658
r_dihedral_angle_4_deg7.694
r_dihedral_angle_1_deg6.109
r_mcangle_it2.373
r_mcbond_it1.402
r_mcbond_other1.401
r_angle_refined_deg1.285
r_angle_other_deg0.932
r_chiral_restr0.072
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3354
Nucleic Acid Atoms
Solvent Atoms9
Heterogen Atoms102

Software

Software
Software NamePurpose
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction