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Structure of lipid phosphate phosphatase PgpB complex with PE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PEG6000, sodium chloride, ADA
Crystal Properties Matthews coefficient Solvent content 3.21 61.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.533 α = 90 b = 73.593 β = 90 c = 132.095 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9794 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 132.1 100 0.102 25.2 14 6838
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 100 0.778 1 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.2 132.1 6800 323 99.91 0.2691 0.2672 0.3051 0.259 RANDOM 93.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.21 10.62 -12.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_3_deg 17.087 r_dihedral_angle_4_deg 14.842 r_mcangle_it 7.21 r_dihedral_angle_1_deg 5.545 r_mcbond_other 4.439 r_mcbond_it 4.438 r_angle_other_deg 3.468 r_angle_refined_deg 1.276 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_3_deg 17.087 r_dihedral_angle_4_deg 14.842 r_mcangle_it 7.21 r_dihedral_angle_1_deg 5.545 r_mcbond_other 4.439 r_mcbond_it 4.438 r_angle_other_deg 3.468 r_angle_refined_deg 1.276 r_chiral_restr 0.061 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2104 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 43
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction PHENIX phasing