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PPARgamma-RXRalpha(S427F) heterodimer in complex with SRC-1, rosiglitazone, and 9-cis-retanoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 296 Crystals grew in the dark at room temperature from 0.5 + 0.5 uL sitting drops equilibrated over a reservoir containing 20-24% PEG3350 and 0.02M Na Citrate
Crystal Properties Matthews coefficient Solvent content 2.34 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.88 α = 90 b = 66.527 β = 90 c = 165.927 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARMOSAIC 225 mm CCD 2015-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9786 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 45.2 100 21.6 7.2 42545
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.98 45.2 40336 2141 99.53 0.19481 0.19206 0.1971 0.246 0.2469 RANDOM 46.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -2.94 2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.205 r_dihedral_angle_4_deg 25.388 r_dihedral_angle_3_deg 15.969 r_long_range_B_other 9.888 r_long_range_B_refined 9.859 r_scangle_other 7.071 r_dihedral_angle_1_deg 6.332 r_mcangle_it 5.827 r_mcangle_other 5.826 r_scbond_it 4.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.205 r_dihedral_angle_4_deg 25.388 r_dihedral_angle_3_deg 15.969 r_long_range_B_other 9.888 r_long_range_B_refined 9.859 r_scangle_other 7.071 r_dihedral_angle_1_deg 6.332 r_mcangle_it 5.827 r_mcangle_other 5.826 r_scbond_it 4.688 r_scbond_other 4.688 r_mcbond_it 4.182 r_mcbond_other 4.182 r_angle_refined_deg 1.921 r_angle_other_deg 1.168 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4088 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing