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ARCs 1-3 of human Tankyrase-1 bound to a peptide derived from IRAP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TWW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 1.8 M (NH4)2SO4
100 mM Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 3.43 64.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.51 α = 90 b = 129.83 β = 92.31 c = 123.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 30 98.2 11.8 5.7 48511
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TWW 3.2 20 45374 2411 96.57 0.21514 0.21382 0.2199 0.23947 0.246 RANDOM 138.813
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.71 -6.01 -4.84 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.159 r_dihedral_angle_3_deg 16.614 r_dihedral_angle_4_deg 12.767 r_long_range_B_refined 6.314 r_long_range_B_other 6.31 r_dihedral_angle_1_deg 6.132 r_scangle_other 2.717 r_mcangle_it 2.685 r_mcangle_other 2.685 r_mcbond_it 1.568
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.159 r_dihedral_angle_3_deg 16.614 r_dihedral_angle_4_deg 12.767 r_long_range_B_refined 6.314 r_long_range_B_other 6.31 r_dihedral_angle_1_deg 6.132 r_scangle_other 2.717 r_mcangle_it 2.685 r_mcangle_other 2.685 r_mcbond_it 1.568 r_mcbond_other 1.568 r_scbond_it 1.54 r_scbond_other 1.54 r_angle_refined_deg 1.301 r_angle_other_deg 1.078 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14623 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing