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Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 in meso lipidic cubic phase crystallization
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.241 α = 90 b = 73.663 β = 90 c = 236.428 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.85 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 59.11 99.8 0.126 0.999 11.03 6.73 13279
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.9 0.844 2.24 6.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 59.11 6759 349 99.79 0.19379 0.19016 0.1927 0.26259 0.2634 RANDOM 44.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.75 -0.59 -5.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.997 r_dihedral_angle_4_deg 21.153 r_dihedral_angle_3_deg 16.547 r_long_range_B_refined 8.109 r_long_range_B_other 8.006 r_dihedral_angle_1_deg 5.741 r_scangle_other 5.15 r_mcangle_it 4.175 r_mcangle_other 4.174 r_scbond_other 3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.997 r_dihedral_angle_4_deg 21.153 r_dihedral_angle_3_deg 16.547 r_long_range_B_refined 8.109 r_long_range_B_other 8.006 r_dihedral_angle_1_deg 5.741 r_scangle_other 5.15 r_mcangle_it 4.175 r_mcangle_other 4.174 r_scbond_other 3.12 r_scbond_it 3.115 r_mcbond_it 2.655 r_mcbond_other 2.655 r_angle_refined_deg 1.409 r_angle_other_deg 0.979 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1782 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing SHELXDE phasing