5J6P

Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	295	0.2M (NH4)2SO4, 20% PEG 3350, 0.4M 1,6-Hexanediol, 0.1M Tris pH 8.5, 4% Dioxane

Crystal Properties
Matthews coefficient	Solvent content
4.17	70.51

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 120.568	α = 90
b = 120.568	β = 90
c = 73.702	γ = 120

Symmetry
Space Group	P 31 1 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2014-03-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U	0.97915	SSRF	BL17U

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	60.39	99.8	0.095	14.9	10.6		18911

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.74	100		0.506	4.8	10.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.6	46.66	17884	971	99.32	0.22849	0.22518	0.29436	RANDOM	85.122

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
3.21	1.6		3.21		-10.41

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.495
r_dihedral_angle_4_deg	23.575
r_dihedral_angle_3_deg	20.26
r_long_range_B_refined	12.071
r_long_range_B_other	12.069
r_scangle_other	9.991
r_mcangle_it	9.149
r_mcangle_other	9.146
r_dihedral_angle_1_deg	8.58
r_scbond_it	6.929
r_scbond_other	6.927
r_mcbond_it	6.479
r_mcbond_other	6.471
r_angle_refined_deg	2.02
r_angle_other_deg	1.17
r_chiral_restr	0.111
r_bond_refined_d	0.015
r_gen_planes_refined	0.007
r_bond_other_d	0.003
r_gen_planes_other	0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2425
Nucleic Acid Atoms
Solvent Atoms	3
Heterogen Atoms	3

Software

Software
Software Name	Purpose
REFMAC	refinement
iMOSFLM	data processing
SCALA	data scaling
PHENIX	phasing
Coot	model building