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Crystal structure of XerA recombinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295.5 PEG 4000, ADA, LiSO4
Crystal Properties Matthews coefficient Solvent content 2.37 48.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.86 α = 90 b = 105.968 β = 110.01 c = 115.586 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-03-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.97952, 0.97987, 0.9800 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 95.4 13.69 3.3 68638
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 47.66 65159 3479 95.25 0.19129 0.18847 0.24321 0.2104 RANDOM 33.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.25 -1.04 1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.931 r_dihedral_angle_4_deg 18.947 r_dihedral_angle_3_deg 18.504 r_long_range_B_refined 6.5 r_long_range_B_other 6.368 r_dihedral_angle_1_deg 6.171 r_scangle_other 4.305 r_mcangle_it 3.67 r_mcangle_other 3.67 r_scbond_it 2.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.931 r_dihedral_angle_4_deg 18.947 r_dihedral_angle_3_deg 18.504 r_long_range_B_refined 6.5 r_long_range_B_other 6.368 r_dihedral_angle_1_deg 6.171 r_scangle_other 4.305 r_mcangle_it 3.67 r_mcangle_other 3.67 r_scbond_it 2.785 r_scbond_other 2.711 r_mcbond_it 2.287 r_mcbond_other 2.287 r_angle_refined_deg 1.82 r_angle_other_deg 0.862 r_chiral_restr 0.12 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13501 Nucleic Acid Atoms Solvent Atoms 491 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling SOLVE phasing RESOLVE model building PDB_EXTRACT data extraction