5HXY | pdb_00005hxy

Crystal structure of XerA recombinase

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phage_integrase_C	e5hxyA1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
A	Phage_integrase_N	e5hxyA2	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
A	Phage_int_SAM_4	e5hxyA3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
B	Phage_integrase_C	e5hxyB1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
B	Phage_integrase_N	e5hxyB3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
B	Phage_int_SAM_4	e5hxyB2	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
C	Phage_integrase_C	e5hxyC3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
C	Phage_integrase_N	e5hxyC1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
C	Phage_int_SAM_4	e5hxyC2	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
D	Phage_integrase_C	e5hxyD1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
D	Phage_integrase_N	e5hxyD3	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
D	Phage_int_SAM_4	e5hxyD2	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
E	Phage_integrase_C	e5hxyE2	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
E	Phage_integrase_N	e5hxyE1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
E	Phage_int_SAM_4	e5hxyE3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
F	Phage_integrase_C	e5hxyF1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_C	ECOD (1.6)
F	Phage_integrase_N	e5hxyF2	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
F	Phage_int_SAM_4	e5hxyF3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00589	Phage integrase family (Phage_integrase)	Phage integrase family	-	Family
A, B, C, D, E A, B, C, D, E, F	PF13495	Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)	Phage integrase, N-terminal SAM-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Tyrosine recombinase XerA	DNA binding binding nucleic acid binding tyrosine-based site-specific recombinase activity integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR033686	Tyrosine recombinase XerA	Family
A, B, C, D, E A, B, C, D, E, F	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR050090	Bacterial tyrosine recombinase XerC/XerD complex	Family
A, B, C, D, E A, B, C, D, E, F	IPR010998	Integrase/recombinase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR044068	Core-binding (CB) domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR002104	Integrase, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR004107	Integrase, SAM-like, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.